J5_4V5J_016
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4V5J|1|DA|G|1758, 4V5J|1|DA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V5J_016 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.176
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V5J|1|DA|G|1674
4V5J|1|DA|C|1675
4V5J|1|DA|A|1676
4V5J|1|DA|A|1677
4V5J|1|DA|G|1678
4V5J|1|DA|U|1679
4V5J|1|DA|U|1680
4V5J|1|DA|G|1681
4V5J|1|DA|G|1682
*
4V5J|1|DA|U|1706
4V5J|1|DA|G|1707
*
4V5J|1|DA|C|1751
4V5J|1|DA|C|1752
*
4V5J|1|DA|G|1756
4V5J|1|DA|U|1757
4V5J|1|DA|G|1758
4V5J|1|DA|A|1759
4V5J|1|DA|A|1760
4V5J|1|DA|C|1761
4V5J|1|DA|A|1762
4V5J|1|DA|G|1763
4V5J|1|DA|G|1764
*
4V5J|1|DA|C|1988
4V5J|1|DA|G|1989
4V5J|1|DA|C|1990
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DE
- 50S RIBOSOMAL PROTEIN L3
- Chain DO
- 50S RIBOSOMAL PROTEIN L14
- Chain DT
- 50S RIBOSOMAL PROTEIN L19
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