Motif J5_99177.2 Version J5_99177.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	break		10		11	break		12		13	break		14		15		16		17		18		19		20	break		21		22		23	1-3	1-23	5-23	9-10	11-12	13-14	15-18	15-19	20-21
1	J5_9DFE_005	9DFE	0.2188	2	1A	LSU rRNA	G	1674	C	1675	A	1676	A	1677	G	1678	U	1679	U	1680	G	1681	G	1682	*	U	1706	G	1707	*	C	1751	C	1752	*	G	1756	U	1757	A	1759	A	1760	C	1761	A	1762	G	1764	*	C	1988	G	1989	C	1990	ntSW	cWW		cWW	cWW	cWW		tWH	cWW
2	J5_7A0S_005	7A0S	0.2332	2	X	LSU rRNA	G	1691	C	1692	A	1693	A	1694	U	1695	C	1696	U	1697	C	1698	A	1699	*	U	1723	C	1724	*	G	1742	C	1743	*	G	1747	U	1748	A	1750	A	1751	U	1752	A	1753	G	1755	*	C	1971	G	1972	C	1973		cWW	ncWS	ncWW	cWW	cWW		ntWH	cWW
3	J5_4WF9_005	4WF9	0.2307	2	X	LSU rRNA	G	1718	C	1719	A	1720	A	1721	A	1722	A	1723	U	1724	G	1725	A	1726	*	U	1750	G	1751	*	C	1778	C	1779	*	G	1783	U	1784	A	1786	A	1787	U	1788	A	1789	G	1791	*	C	2015	A	2016	C	2017		cWW	ncsS	cWW	cWW	cWW		tWH	cWW
4	J5_8B0X_007	8B0X	0.1839	2	a	LSU rRNA	G	1676	C	1677	A	1678	A	1679	A	1680	A	1681	U	1682	G	1683	G	1684	*	C	1708	G	1709	*	U	1753	C	1754	*	G	1758	A	1759	A	1761	C	1762	C	1763	A	1764	C	1766	*	G	1992	G	1993	C	1994		cWW	ncsS	cWW	cWW	cWW			cWW
5	J5_9AXU_004	9AXU	0.0887	2	2	LSU rRNA	G	1961	C	1962	A	1963	A	1964	A	1965	A	1966	U	1967	G	1968	G	1969	*	U	1993	G	1994	*	U	2197	G	2198	*	C	2202	G	2203	A	2205	C	2206	A	2207	A	2208	G	2210	*	C	2419	A	2420	C	2421		cWW	ncsS	cWW	cWW	cWW			cWW
6	J5_9H3G_004	9H3G	0.0896	2	A	LSU rRNA	G	1908	C	1909	A	1910	A	1911	A	1912	A	1913	U	1914	G	1915	G	1916	*	U	1940	G	1941	*	U	2108	G	2109	*	C	2113	G	2114	A	2116	C	2117	A	2118	A	2119	G	2121	*	C	2329	A	2330	C	2331		cWW	ncsS	cWW	cWW	cWW			cWW
7	J5_8P9A_013	8P9A	0.1031	2	AR	LSU rRNA	G	1906	C	1907	A	1908	A	1909	A	1910	A	1911	U	1912	A	1913	G	1914	*	U	1938	G	1939	*	U	2109	G	2110	*	C	2114	G	2115	A	2117	C	2118	A	2119	A	2120	G	2122	*	C	2331	A	2332	C	2333		cWW	ncsS	cWW	cWW	cWW			cWW
8	J5_8OI5_004	8OI5	0.0803	2	1	LSU rRNA	G	1902	C	1903	A	1904	A	1905	A	1906	A	1907	U	1908	A	1909	G	1910	*	U	1934	G	1935	*	U	2087	G	2088	*	C	2092	G	2093	A	2095	C	2096	A	2097	A	2098	G	2100	*	C	2309	A	2310	C	2311		cWW	ncsS	cWW	cWW	cWW			cWW
9	J5_8GLP_003	8GLP	0.0000	2	L5	LSU rRNA	G	2855	C	2856	A	2857	A	2858	G	2859	C	2860	OMC	2861	G	2862	G	2863	*	U	2887	G	2888	*	U	3613	G	3614	*	C	3618	G	3619	A	3621	C	3622	C	3623	A	3624	G	3626	*	C	3835	A	3836	C	3837		cWW	ncsS	cWW	cWW	cWW			cWW
10	J5_9E6Q_005	9E6Q	0.0937	2	1	LSU rRNA	G	1818	C	1819	A	1820	A	1821	A	1822	U	1823	U	1824	G	1825	G	1826	*	U	1850	G	1851	*	U	1887	C	1888	*	G	1892	U	1893	G	1895	C	1896	A	1897	A	1898	G	1900	*	C	2109	A	2110	C	2111		cWW	ncsS	cWW	cWW	cWW			cWW
11	J5_4V9F_006	4V9F	0.1336	2	0	LSU rRNA	G	1752	C	1753	A	1754	A	1755	G	1756	U	1757	U	1758	A	1759	G	1760	*	U	1784	G	1785	*	U	1807	C	1808	*	G	1812	U	1813	A	1815	C	1816	U	1817	C	1818	G	1820	*	C	2029	A	2030	C	2031		cWW	ncsS	cWW	cWW	cWW	cwW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCAAAAUGGUGUGCGGACAAGGCAC	2
GCAAAAUAGUGUGCGGACAAGGCAC	2
GCAAGUUGGUGCCGUGAACAGGCGC	1
GCAAUCUCAUCGCGUGAAUAGGCGC	1
GCAAAAUGAUGCCGUGAAUAGGCAC	1
GCAAAAUGGCGUCGAUACCAGCGGC	1
GCAAGC(OMC)GGUGUGCGGACCAGGCAC	1
GCAAAUUGGUGUCGUGGCAAGGCAC	1
GCAAGUUAGUGUCGUGACUCGGCAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAAAAUG**GGACAAGA	2
CAAAAUA**GGACAAGA	2
CAAGUUG**UGAACAGG	1
CAAUCUC**UGAAUAGG	1
CAAAAUG**UGAAUAGA	1
CAAAAUG**AUACCAGG	1
CAAGC(OMC)G**GGACCAGA	1
CAAAUUG**UGGCAAGA	1
CAAGUUA**UGACUCGA	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (11)
Basepair signature: cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.18 | Max 0.45

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Coloring options: Nucleotide numbers

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