J5_4V5K_001

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5K_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.097

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5K|1|AA|C|36
4V5K|1|AA|U|37
4V5K|1|AA|G|38
4V5K|1|AA|G|39
*
4V5K|1|AA|C|403
4V5K|1|AA|U|404
4V5K|1|AA|U|405
4V5K|1|AA|G|406
*
4V5K|1|AA|C|436
4V5K|1|AA|U|437
4V5K|1|AA|G|438
4V5K|1|AA|A|439
4V5K|1|AA|A|441
4V5K|1|AA|C|442
*
4V5K|1|AA|G|492
4V5K|1|AA|G|493
4V5K|1|AA|U|494
4V5K|1|AA|A|495
4V5K|1|AA|A|496
4V5K|1|AA|U|498
4V5K|1|AA|A|499
4V5K|1|AA|G|500
*
4V5K|1|AA|C|545
4V5K|1|AA|G|546
4V5K|1|AA|A|547
4V5K|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain DI

50S RIBOSOMAL PROTEIN L9