J5_4V5K_006
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4V5K|1|BA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V5K_006 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0527
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V5K|1|BA|C|584
4V5K|1|BA|G|585
4V5K|1|BA|A|586
4V5K|1|BA|C|587
4V5K|1|BA|U|588
4V5K|1|BA|C|589
*
4V5K|1|BA|G|668
4V5K|1|BA|G|669
4V5K|1|BA|A|670
4V5K|1|BA|C|671
*
4V5K|1|BA|G|809
4V5K|1|BA|U|810
4V5K|1|BA|U|811
4V5K|1|BA|C|812
*
4V5K|1|BA|G|1195
4V5K|1|BA|C|1196
*
4V5K|1|BA|G|1250
4V5K|1|BA|C|1251
4V5K|1|BA|G|1252
4V5K|1|BA|A|1253
4V5K|1|BA|A|1254
4V5K|1|BA|U|1255
4V5K|1|BA|G|1256
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B8
- 50S RIBOSOMAL PROTEIN L35
- Chain BF
- 50S RIBOSOMAL PROTEIN L4
- Chain BP
- 50S RIBOSOMAL PROTEIN L15
- Chain BU
- 50S RIBOSOMAL PROTEIN L20
- Chain BV
- 50S RIBOSOMAL PROTEIN L21
Coloring options: