J5_4V5O_001

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CUUGU*AAAUAGC*GAAAUGAGAACA*UUAGCGAGGAACAAU*AUAG

Length

43 nucleotides

Bulged bases

4V5O|1|AA|A|534, 4V5O|1|AA|A|535, 4V5O|1|AA|A|537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5O|1|AA|C|30
4V5O|1|AA|U|31
4V5O|1|AA|U|32
4V5O|1|AA|G|33
4V5O|1|AA|U|34
*
4V5O|1|AA|A|465
4V5O|1|AA|A|466
4V5O|1|AA|A|467
4V5O|1|AA|U|468
4V5O|1|AA|A|469
4V5O|1|AA|G|470
4V5O|1|AA|C|471
*
4V5O|1|AA|G|502
4V5O|1|AA|A|503
4V5O|1|AA|A|504
4V5O|1|AA|A|505
4V5O|1|AA|U|506
4V5O|1|AA|G|507
4V5O|1|AA|A|508
4V5O|1|AA|G|509
4V5O|1|AA|A|510
4V5O|1|AA|A|511
4V5O|1|AA|C|512
4V5O|1|AA|A|513
*
4V5O|1|AA|U|525
4V5O|1|AA|U|526
4V5O|1|AA|A|527
4V5O|1|AA|G|528
4V5O|1|AA|C|529
4V5O|1|AA|G|530
4V5O|1|AA|A|531
4V5O|1|AA|G|532
4V5O|1|AA|G|533
4V5O|1|AA|A|534
4V5O|1|AA|A|535
4V5O|1|AA|C|536
4V5O|1|AA|A|537
4V5O|1|AA|A|538
4V5O|1|AA|U|539
*
4V5O|1|AA|A|586
4V5O|1|AA|U|587
4V5O|1|AA|A|588
4V5O|1|AA|G|589

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AD

RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN

Chain AL

40S RIBOSOMAL PROTEIN S12

Chain AP

RPS24E

Chain AX

RPS30E