J5_4V5O_002

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CAUG*CGAAUGGC*GAA*UACA*UCGGCAG

Length

26 nucleotides

Bulged bases

4V5O|1|AA|C|413, 4V5O|1|AA|C|416, 4V5O|1|AA|A|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5O|1|AA|C|53
4V5O|1|AA|A|54
4V5O|1|AA|U|55
4V5O|1|AA|G|56
*
4V5O|1|AA|C|86
4V5O|1|AA|G|87
4V5O|1|AA|A|88
4V5O|1|AA|A|89
4V5O|1|AA|U|90
4V5O|1|AA|G|91
4V5O|1|AA|G|92
4V5O|1|AA|C|93
*
4V5O|1|AA|G|377
4V5O|1|AA|A|378
4V5O|1|AA|A|379
*
4V5O|1|AA|U|400
4V5O|1|AA|A|401
4V5O|1|AA|C|402
4V5O|1|AA|A|403
*
4V5O|1|AA|U|412
4V5O|1|AA|C|413
4V5O|1|AA|G|414
4V5O|1|AA|G|415
4V5O|1|AA|C|416
4V5O|1|AA|A|417
4V5O|1|AA|G|418

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AD

RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN

Chain AP

RPS24E

Chain AW

40S RIBOSOMAL PROTEIN S4

Chain AY

RPS6E