Loop J5_4V5O

3D structure

PDB id: 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description: CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.93 Å

Loop

Sequence: AACUUCU*AUACGUUUGCAAACU*AGGGAGUAAACAUU*AUGGAAUAGGA*UAAUGAUU
Length: 55 nucleotides
Bulged bases: 4V5O|1|AA|U|633, 4V5O|1|AA|U|674, 4V5O|1|AA|C|676, 4V5O|1|AA|U|796, 4V5O|1|AA|A|834
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5O|1|AA|A|629
4V5O|1|AA|A|630
4V5O|1|AA|C|631
4V5O|1|AA|U|632
4V5O|1|AA|U|633
4V5O|1|AA|C|634
4V5O|1|AA|U|635
*
4V5O|1|AA|A|673
4V5O|1|AA|U|674
4V5O|1|AA|A|675
4V5O|1|AA|C|676
4V5O|1|AA|G|677
4V5O|1|AA|U|678
4V5O|1|AA|U|679
4V5O|1|AA|U|680
4V5O|1|AA|G|681
4V5O|1|AA|C|682
4V5O|1|AA|A|683
4V5O|1|AA|A|684
4V5O|1|AA|A|685
4V5O|1|AA|C|686
4V5O|1|AA|U|687
*
4V5O|1|AA|A|714
4V5O|1|AA|G|715
4V5O|1|AA|G|716
4V5O|1|AA|G|717
4V5O|1|AA|A|718
4V5O|1|AA|G|719
4V5O|1|AA|U|720
4V5O|1|AA|A|721
4V5O|1|AA|A|722
4V5O|1|AA|A|723
4V5O|1|AA|C|724
4V5O|1|AA|A|725
4V5O|1|AA|U|726
4V5O|1|AA|U|727
*
4V5O|1|AA|A|790
4V5O|1|AA|U|791
4V5O|1|AA|G|792
4V5O|1|AA|G|793
4V5O|1|AA|A|794
4V5O|1|AA|A|795
4V5O|1|AA|U|796
4V5O|1|AA|A|797
4V5O|1|AA|G|798
4V5O|1|AA|G|799
4V5O|1|AA|A|800
*
4V5O|1|AA|U|832
4V5O|1|AA|A|833
4V5O|1|AA|A|834
4V5O|1|AA|U|835
4V5O|1|AA|G|836
4V5O|1|AA|A|837
4V5O|1|AA|U|838
4V5O|1|AA|U|839

Current chains

Chain AA: 18S RRNA

Nearby chains

Chain A3: RPS7E
Chain AH: RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN
Chain AL: 40S RIBOSOMAL PROTEIN S12
Chain AO: RPS13E
Chain AQ: RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN
Chain AW: 40S RIBOSOMAL PROTEIN S4

J5_4V5O_003