J5_4V5O_006
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- AACUUCU*AUACGUUUGCAAACU*AGGGAGUAAACAUU*AUGGAAUAGGA*UAAUGAUU
- Length
- 55 nucleotides
- Bulged bases
- 4V5O|1|BA|U|633, 4V5O|1|BA|U|674, 4V5O|1|BA|C|676, 4V5O|1|BA|U|796, 4V5O|1|BA|A|834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5O|1|BA|A|629
4V5O|1|BA|A|630
4V5O|1|BA|C|631
4V5O|1|BA|U|632
4V5O|1|BA|U|633
4V5O|1|BA|C|634
4V5O|1|BA|U|635
*
4V5O|1|BA|A|673
4V5O|1|BA|U|674
4V5O|1|BA|A|675
4V5O|1|BA|C|676
4V5O|1|BA|G|677
4V5O|1|BA|U|678
4V5O|1|BA|U|679
4V5O|1|BA|U|680
4V5O|1|BA|G|681
4V5O|1|BA|C|682
4V5O|1|BA|A|683
4V5O|1|BA|A|684
4V5O|1|BA|A|685
4V5O|1|BA|C|686
4V5O|1|BA|U|687
*
4V5O|1|BA|A|714
4V5O|1|BA|G|715
4V5O|1|BA|G|716
4V5O|1|BA|G|717
4V5O|1|BA|A|718
4V5O|1|BA|G|719
4V5O|1|BA|U|720
4V5O|1|BA|A|721
4V5O|1|BA|A|722
4V5O|1|BA|A|723
4V5O|1|BA|C|724
4V5O|1|BA|A|725
4V5O|1|BA|U|726
4V5O|1|BA|U|727
*
4V5O|1|BA|A|790
4V5O|1|BA|U|791
4V5O|1|BA|G|792
4V5O|1|BA|G|793
4V5O|1|BA|A|794
4V5O|1|BA|A|795
4V5O|1|BA|U|796
4V5O|1|BA|A|797
4V5O|1|BA|G|798
4V5O|1|BA|G|799
4V5O|1|BA|A|800
*
4V5O|1|BA|U|832
4V5O|1|BA|A|833
4V5O|1|BA|A|834
4V5O|1|BA|U|835
4V5O|1|BA|G|836
4V5O|1|BA|A|837
4V5O|1|BA|U|838
4V5O|1|BA|U|839
Current chains
- Chain BA
- 18S RRNA
Nearby chains
- Chain B3
- RPS7E
- Chain BH
- RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN
- Chain BL
- 40S RIBOSOMAL PROTEIN S12
- Chain BO
- RPS13E
- Chain BQ
- RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN
- Chain BW
- 40S RIBOSOMAL PROTEIN S4
Coloring options: