J5_4V5P_010

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5P_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1069

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5P|1|CA|C|36
4V5P|1|CA|U|37
4V5P|1|CA|G|38
4V5P|1|CA|G|39
*
4V5P|1|CA|C|403
4V5P|1|CA|U|404
4V5P|1|CA|U|405
4V5P|1|CA|G|406
*
4V5P|1|CA|C|436
4V5P|1|CA|U|437
4V5P|1|CA|G|438
4V5P|1|CA|A|439
4V5P|1|CA|A|441
4V5P|1|CA|C|442
*
4V5P|1|CA|G|492
4V5P|1|CA|G|493
4V5P|1|CA|U|494
4V5P|1|CA|A|495
4V5P|1|CA|A|496
4V5P|1|CA|U|498
4V5P|1|CA|A|499
4V5P|1|CA|G|500
*
4V5P|1|CA|C|545
4V5P|1|CA|G|546
4V5P|1|CA|A|547
4V5P|1|CA|G|548

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CZ

ELONGATION FACTOR TU