J5_4V5Y_014
3D structure
- PDB id
- 4V5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.45 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4V5Y|1|DB|A|532, 4V5Y|1|DB|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V5Y_014 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.1074
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5Y|1|DB|C|531
4V5Y|1|DB|A|532
4V5Y|1|DB|G|533
*
4V5Y|1|DB|C|560
4V5Y|1|DB|G|561
4V5Y|1|DB|U|562
4V5Y|1|DB|A|563
4V5Y|1|DB|C|564
*
4V5Y|1|DB|G|577
4V5Y|1|DB|G|578
4V5Y|1|DB|G|579
*
4V5Y|1|DB|C|1261
4V5Y|1|DB|A|1262
*
4V5Y|1|DB|U|2017
4V5Y|1|DB|G|2018
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L32
- Chain DE
- 50S ribosomal protein L4
- Chain DJ
- 50S ribosomal protein L13
- Chain DQ
- 50S ribosomal protein L20
- Chain DR
- 50S ribosomal protein L21
- Chain DS
- 50S ribosomal protein L22
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