J5_4V61_001

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUGG*CGUG*CUUUUCC*GGGAAUAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V61_001 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1166

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V61|1|AA|C|37
4V61|1|AA|U|38
4V61|1|AA|G|39
4V61|1|AA|G|40
*
4V61|1|AA|C|374
4V61|1|AA|G|375
4V61|1|AA|U|376
4V61|1|AA|G|377
*
4V61|1|AA|C|407
4V61|1|AA|U|408
4V61|1|AA|U|409
4V61|1|AA|U|410
4V61|1|AA|U|411
4V61|1|AA|C|412
4V61|1|AA|C|413
*
4V61|1|AA|G|440
4V61|1|AA|G|441
4V61|1|AA|G|442
4V61|1|AA|A|443
4V61|1|AA|A|444
4V61|1|AA|U|445
4V61|1|AA|A|446
4V61|1|AA|A|447
4V61|1|AA|G|448
*
4V61|1|AA|C|493
4V61|1|AA|A|494
4V61|1|AA|A|495
4V61|1|AA|G|496

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

Ribosomal Protein S4

Chain AL

Ribosomal Protein S12