J5_4V61_002
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V61|1|AA|A|61, 4V61|1|AA|A|93, 4V61|1|AA|C|323, 4V61|1|AA|A|324
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V61_002 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1182
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V61|1|AA|C|59
4V61|1|AA|A|60
4V61|1|AA|A|61
4V61|1|AA|G|62
*
4V61|1|AA|C|90
4V61|1|AA|G|91
4V61|1|AA|G|92
4V61|1|AA|A|93
4V61|1|AA|C|94
4V61|1|AA|G|95
4V61|1|AA|G|96
4V61|1|AA|G|97
*
4V61|1|AA|C|285
4V61|1|AA|A|286
4V61|1|AA|C|287
*
4V61|1|AA|G|308
4V61|1|AA|A|309
4V61|1|AA|C|310
*
4V61|1|AA|G|321
4V61|1|AA|G|322
4V61|1|AA|C|323
4V61|1|AA|A|324
4V61|1|AA|G|325
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AP
- Ribosomal Protein S16
- Chain AT
- Ribosomal Protein S20
- Chain BM
- Ribosomal Protein L14
Coloring options: