Loop J5_4V61

3D structure

PDB id: 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å

Loop

Sequence: GCGACUCAU*AUGGAC*GUUC*GCGUUCCG*CGGAAGCGAGAAUGU
Length: 42 nucleotides
Bulged bases: 4V61|1|BA|C|597, 4V61|1|BA|G|1269, 4V61|1|BA|G|1273, 4V61|1|BA|A|1274, 4V61|1|BA|U|1276
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V61|1|BA|G|593
4V61|1|BA|C|594
4V61|1|BA|G|595
4V61|1|BA|A|596
4V61|1|BA|C|597
4V61|1|BA|U|598
4V61|1|BA|C|599
4V61|1|BA|A|600
4V61|1|BA|U|601
*
4V61|1|BA|A|677
4V61|1|BA|U|678
4V61|1|BA|G|679
4V61|1|BA|G|680
4V61|1|BA|A|681
4V61|1|BA|C|682
*
4V61|1|BA|G|820
4V61|1|BA|U|821
4V61|1|BA|U|822
4V61|1|BA|C|823
*
4V61|1|BA|G|1216
4V61|1|BA|C|1217
4V61|1|BA|G|1218
4V61|1|BA|U|1219
4V61|1|BA|U|1220
4V61|1|BA|C|1221
4V61|1|BA|C|1222
4V61|1|BA|G|1223
*
4V61|1|BA|C|1264
4V61|1|BA|G|1265
4V61|1|BA|G|1266
4V61|1|BA|A|1267
4V61|1|BA|A|1268
4V61|1|BA|G|1269
4V61|1|BA|C|1270
4V61|1|BA|G|1271
4V61|1|BA|A|1272
4V61|1|BA|G|1273
4V61|1|BA|A|1274
4V61|1|BA|A|1275
4V61|1|BA|U|1276
4V61|1|BA|G|1277
4V61|1|BA|U|1278

Current chains

Chain BA: 23S rRNA

Nearby chains

Chain B5: Ribosomal Protein L35
Chain BG: Ribosomal Protein L4
Chain BN: Ribosomal Protein L15
Chain BS: Ribosomal Protein L20
Chain BT: Ribosomal Protein L21

J5_4V61_003