J5_4V61_005
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAGG*CACCUCGAUGU*GUUCAG*CGGUCC
- Length
- 41 nucleotides
- Bulged bases
- 4V61|1|BA|A|2465, 4V61|1|BA|U|2602, 4V61|1|BA|U|2626
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V61|1|BA|G|2071
4V61|1|BA|A|2072
4V61|1|BA|A|2073
4V61|1|BA|A|2074
4V61|1|BA|G|2075
4V61|1|BA|A|2076
4V61|1|BA|C|2077
4V61|1|BA|C|2078
*
4V61|1|BA|G|2463
4V61|1|BA|G|2464
4V61|1|BA|A|2465
4V61|1|BA|U|2466
4V61|1|BA|A|2467
4V61|1|BA|A|2468
4V61|1|BA|C|2469
4V61|1|BA|A|2470
4V61|1|BA|G|2471
4V61|1|BA|G|2472
*
4V61|1|BA|C|2513
4V61|1|BA|A|2514
4V61|1|BA|C|2515
4V61|1|BA|C|2516
4V61|1|BA|U|2517
4V61|1|BA|C|2518
4V61|1|BA|G|2519
4V61|1|BA|A|2520
4V61|1|BA|U|2521
4V61|1|BA|G|2522
4V61|1|BA|U|2523
*
4V61|1|BA|G|2600
4V61|1|BA|U|2601
4V61|1|BA|U|2602
4V61|1|BA|C|2603
4V61|1|BA|A|2604
4V61|1|BA|G|2605
*
4V61|1|BA|C|2623
4V61|1|BA|G|2624
4V61|1|BA|G|2625
4V61|1|BA|U|2626
4V61|1|BA|C|2627
4V61|1|BA|C|2628
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B2
- Ribosomal Protein L32
- Chain BE
- Ribosomal Protein L2
- Chain BF
- Ribosomal Protein L3
- Chain BG
- Ribosomal Protein L4
- Chain BO
- Ribosomal Protein L16
- Chain BU
- Ribosomal Protein L22
Coloring options: