Loop J5_4V61

3D structure

PDB id: 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å

Loop

Sequence: UAAGGAACUCGGCAAAAUAG*UG*UC*GUGACCAGG*CACUGUCUCG
Length: 43 nucleotides
Bulged bases: 4V61|1|BA|G|1773
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V61|1|BA|U|1699
4V61|1|BA|A|1700
4V61|1|BA|A|1701
4V61|1|BA|G|1702
4V61|1|BA|G|1703
4V61|1|BA|A|1704
4V61|1|BA|A|1705
4V61|1|BA|C|1706
4V61|1|BA|U|1707
4V61|1|BA|C|1708
4V61|1|BA|G|1709
4V61|1|BA|G|1710
4V61|1|BA|C|1711
4V61|1|BA|A|1712
4V61|1|BA|A|1713
4V61|1|BA|A|1714
4V61|1|BA|A|1715
4V61|1|BA|U|1716
4V61|1|BA|A|1717
4V61|1|BA|G|1718
*
4V61|1|BA|U|1742
4V61|1|BA|G|1743
*
4V61|1|BA|U|1761
4V61|1|BA|C|1762
*
4V61|1|BA|G|1766
4V61|1|BA|U|1767
4V61|1|BA|G|1768
4V61|1|BA|A|1769
4V61|1|BA|C|1770
4V61|1|BA|C|1771
4V61|1|BA|A|1772
4V61|1|BA|G|1773
4V61|1|BA|G|1774
*
4V61|1|BA|C|2002
4V61|1|BA|A|2003
4V61|1|BA|C|2004
4V61|1|BA|U|2005
4V61|1|BA|G|2006
4V61|1|BA|U|2007
4V61|1|BA|C|2008
4V61|1|BA|U|2009
4V61|1|BA|C|2010
4V61|1|BA|G|2011

Current chains

Chain BA: 23S rRNA

Nearby chains

Chain AA: Small subunit ribosomal RNA; SSU rRNA
Chain BC: 4.8S rRNA
Chain BF: Ribosomal Protein L3
Chain BM: Ribosomal Protein L14
Chain BR: Ribosomal Protein L19

J5_4V61_007