J5_4V63_001

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V63_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0897

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V63|1|AA|C|36
4V63|1|AA|U|37
4V63|1|AA|G|38
4V63|1|AA|G|39
*
4V63|1|AA|C|403
4V63|1|AA|U|404
4V63|1|AA|U|405
4V63|1|AA|G|406
*
4V63|1|AA|C|436
4V63|1|AA|U|437
4V63|1|AA|G|438
4V63|1|AA|A|439
4V63|1|AA|A|440
4V63|1|AA|C|442
*
4V63|1|AA|G|492
4V63|1|AA|G|493
4V63|1|AA|U|494
4V63|1|AA|A|495
4V63|1|AA|A|496
4V63|1|AA|U|497
4V63|1|AA|A|498
4V63|1|AA|G|500
*
4V63|1|AA|C|545
4V63|1|AA|G|546
4V63|1|AA|A|547
4V63|1|AA|G|548

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain DI

50S ribosomal protein L9