J5_4V65_006
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAGAACUCGGGUGAAGGAACUAGGCAAAAUGG*CG*UC*GAUACCAGC*GGCUGUCUCCACCCGAGACU
- Length
- 65 nucleotides
- Bulged bases
- 4V65|1|BB|U|1657, 4V65|1|BB|C|1675, 4V65|1|BB|A|1757, 4V65|1|BB|U|1758, 4V65|1|BB|G|1763, 4V65|1|BB|C|1999
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V65|1|BB|G|1651
4V65|1|BB|A|1652
4V65|1|BB|G|1653
4V65|1|BB|A|1654
4V65|1|BB|A|1655
4V65|1|BB|C|1656
4V65|1|BB|U|1657
4V65|1|BB|C|1658
4V65|1|BB|G|1659
4V65|1|BB|G|1660
4V65|1|BB|G|1661
4V65|1|BB|U|1662
4V65|1|BB|G|1663
4V65|1|BB|A|1664
4V65|1|BB|A|1665
4V65|1|BB|G|1666
4V65|1|BB|G|1667
4V65|1|BB|A|1668
4V65|1|BB|A|1669
4V65|1|BB|C|1670
4V65|1|BB|U|1671
4V65|1|BB|A|1672
4V65|1|BB|G|1673
4V65|1|BB|G|1674
4V65|1|BB|C|1675
4V65|1|BB|A|1676
4V65|1|BB|A|1677
4V65|1|BB|A|1678
4V65|1|BB|A|1679
4V65|1|BB|U|1680
4V65|1|BB|G|1681
4V65|1|BB|G|1682
*
4V65|1|BB|C|1706
4V65|1|BB|G|1707
*
4V65|1|BB|U|1751
4V65|1|BB|C|1752
*
4V65|1|BB|G|1756
4V65|1|BB|A|1757
4V65|1|BB|U|1758
4V65|1|BB|A|1759
4V65|1|BB|C|1760
4V65|1|BB|C|1761
4V65|1|BB|A|1762
4V65|1|BB|G|1763
4V65|1|BB|C|1764
*
4V65|1|BB|G|1988
4V65|1|BB|G|1989
4V65|1|BB|C|1990
4V65|1|BB|U|1991
4V65|1|BB|G|1992
4V65|1|BB|U|1993
4V65|1|BB|C|1994
4V65|1|BB|U|1995
4V65|1|BB|C|1996
4V65|1|BB|C|1997
4V65|1|BB|A|1998
4V65|1|BB|C|1999
4V65|1|BB|C|2000
4V65|1|BB|C|2001
4V65|1|BB|G|2002
4V65|1|BB|A|2003
4V65|1|BB|G|2004
4V65|1|BB|A|2005
4V65|1|BB|C|2006
4V65|1|BB|U|2007
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- 50S ribosomal protein L14
- Chain BG
- 50S ribosomal protein L17
- Chain BI
- 50S ribosomal protein L19
- Chain BT
- 50S ribosomal protein L32
- Chain BY
- 50S ribosomal protein L3
Coloring options: