J5_4V65_007

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

ACUAGGCAAAAUGG*CG*UC*GAUACCAGC*GGCUGU

Length

33 nucleotides

Bulged bases

4V65|1|BB|C|1675, 4V65|1|BB|A|1757, 4V65|1|BB|U|1758, 4V65|1|BB|G|1763, 4V65|1|BB|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|A|1669
4V65|1|BB|C|1670
4V65|1|BB|U|1671
4V65|1|BB|A|1672
4V65|1|BB|G|1673
4V65|1|BB|G|1674
4V65|1|BB|C|1675
4V65|1|BB|A|1676
4V65|1|BB|A|1677
4V65|1|BB|A|1678
4V65|1|BB|A|1679
4V65|1|BB|U|1680
4V65|1|BB|G|1681
4V65|1|BB|G|1682
*
4V65|1|BB|C|1706
4V65|1|BB|G|1707
*
4V65|1|BB|U|1751
4V65|1|BB|C|1752
*
4V65|1|BB|G|1756
4V65|1|BB|A|1757
4V65|1|BB|U|1758
4V65|1|BB|A|1759
4V65|1|BB|C|1760
4V65|1|BB|C|1761
4V65|1|BB|A|1762
4V65|1|BB|G|1763
4V65|1|BB|C|1764
*
4V65|1|BB|G|1988
4V65|1|BB|G|1989
4V65|1|BB|C|1990
4V65|1|BB|U|1991
4V65|1|BB|G|1992
4V65|1|BB|U|1993

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L14

Chain BI

50S ribosomal protein L19

Chain BY

50S ribosomal protein L3