J5_4V65_011

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAGC

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|A1|G|35
4V65|1|A1|C|36
4V65|1|A1|U|37
4V65|1|A1|G|38
4V65|1|A1|G|39
*
4V65|1|A1|C|403
4V65|1|A1|G|404
4V65|1|A1|U|405
4V65|1|A1|G|406
*
4V65|1|A1|C|436
4V65|1|A1|U|437
4V65|1|A1|U|438
4V65|1|A1|U|439
4V65|1|A1|C|440
4V65|1|A1|A|441
4V65|1|A1|G|442
*
4V65|1|A1|C|492
4V65|1|A1|A|493
4V65|1|A1|G|494
4V65|1|A1|A|495
4V65|1|A1|A|496
4V65|1|A1|G|497
4V65|1|A1|A|498
4V65|1|A1|A|499
4V65|1|A1|G|500
*
4V65|1|A1|C|545
4V65|1|A1|A|546
4V65|1|A1|A|547
4V65|1|A1|G|548
4V65|1|A1|C|549

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S12

Chain AR

30S ribosomal protein S4