J5_4V65_013
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGAAAGCUAUUUAGGUAGCGCCU*GGAGACACACGGCG*CGUCGUGAAGAGGGAAACAACCCAGACCGCCA*UGCGGCAG*UUGGGUAG
- Length
- 85 nucleotides
- Bulged bases
- 4V65|1|BB|A|819, 4V65|1|BB|C|823, 4V65|1|BB|U|827, 4V65|1|BB|C|946, 4V65|1|BB|A|975, 4V65|1|BB|A|980, 4V65|1|BB|A|981, 4V65|1|BB|C|982, 4V65|1|BB|A|983, 4V65|1|BB|C|986, 4V65|1|BB|C|987, 4V65|1|BB|A|988, 4V65|1|BB|G|989, 4V65|1|BB|C|995, 4V65|1|BB|G|1187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V65|1|BB|C|817
4V65|1|BB|G|818
4V65|1|BB|A|819
4V65|1|BB|A|820
4V65|1|BB|A|821
4V65|1|BB|G|822
4V65|1|BB|C|823
4V65|1|BB|U|824
4V65|1|BB|A|825
4V65|1|BB|U|826
4V65|1|BB|U|827
4V65|1|BB|U|828
4V65|1|BB|A|829
4V65|1|BB|G|830
4V65|1|BB|G|831
4V65|1|BB|U|832
4V65|1|BB|A|833
4V65|1|BB|G|834
4V65|1|BB|C|835
4V65|1|BB|G|836
4V65|1|BB|C|837
4V65|1|BB|C|838
4V65|1|BB|U|839
*
4V65|1|BB|G|939
4V65|1|BB|G|940
4V65|1|BB|A|941
4V65|1|BB|G|942
4V65|1|BB|A|943
4V65|1|BB|C|944
4V65|1|BB|A|945
4V65|1|BB|C|946
4V65|1|BB|A|947
4V65|1|BB|C|948
4V65|1|BB|G|949
4V65|1|BB|G|950
4V65|1|BB|C|951
4V65|1|BB|G|952
*
4V65|1|BB|C|965
4V65|1|BB|G|966
4V65|1|BB|U|967
4V65|1|BB|C|968
4V65|1|BB|G|969
4V65|1|BB|U|970
4V65|1|BB|G|971
4V65|1|BB|A|972
4V65|1|BB|A|973
4V65|1|BB|G|974
4V65|1|BB|A|975
4V65|1|BB|G|976
4V65|1|BB|G|977
4V65|1|BB|G|978
4V65|1|BB|A|979
4V65|1|BB|A|980
4V65|1|BB|A|981
4V65|1|BB|C|982
4V65|1|BB|A|983
4V65|1|BB|A|984
4V65|1|BB|C|985
4V65|1|BB|C|986
4V65|1|BB|C|987
4V65|1|BB|A|988
4V65|1|BB|G|989
4V65|1|BB|A|990
4V65|1|BB|C|991
4V65|1|BB|C|992
4V65|1|BB|G|993
4V65|1|BB|C|994
4V65|1|BB|C|995
4V65|1|BB|A|996
*
4V65|1|BB|U|1159
4V65|1|BB|G|1160
4V65|1|BB|C|1161
4V65|1|BB|G|1162
4V65|1|BB|G|1163
4V65|1|BB|C|1164
4V65|1|BB|A|1165
4V65|1|BB|G|1166
*
4V65|1|BB|U|1183
4V65|1|BB|U|1184
4V65|1|BB|G|1185
4V65|1|BB|G|1186
4V65|1|BB|G|1187
4V65|1|BB|U|1188
4V65|1|BB|A|1189
4V65|1|BB|G|1190
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain B6
- 50S ribosomal protein L13
- Chain BA
- 5S ribosomal RNA; 5S rRNA
- Chain BE
- 50S ribosomal protein L15
- Chain BJ
- 50S ribosomal protein L20
- Chain BK
- 50S ribosomal protein L21
- Chain BP
- 50S ribosomal protein L27
- Chain BR
- 50S ribosomal protein L30
- Chain BW
- 50S ribosomal protein L35
Coloring options: