J5_4V65_015

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGCAAGACGGAAAGACCCCG*CGGGGAUAACAGGCUGAUAC*GUGUUUGGCACCUCGAUGUCGGCUCAUCAC*GUGGUACGCGAGCUGGGUUUAG*CGGUCCCUAUCUGCC

Length

107 nucleotides

Bulged bases

4V65|1|BB|A|2054, 4V65|1|BB|C|2055, 4V65|1|BB|A|2059, 4V65|1|BB|A|2062, 4V65|1|BB|C|2066, 4V65|1|BB|G|2445, 4V65|1|BB|A|2448, 4V65|1|BB|A|2450, 4V65|1|BB|A|2451, 4V65|1|BB|C|2456, 4V65|1|BB|U|2489, 4V65|1|BB|U|2491, 4V65|1|BB|G|2502, 4V65|1|BB|G|2505, 4V65|1|BB|G|2569, 4V65|1|BB|C|2573, 4V65|1|BB|G|2578, 4V65|1|BB|U|2580, 4V65|1|BB|U|2609, 4V65|1|BB|C|2610, 4V65|1|BB|U|2613, 4V65|1|BB|A|2614, 4V65|1|BB|U|2615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|2048
4V65|1|BB|G|2049
4V65|1|BB|C|2050
4V65|1|BB|A|2051
4V65|1|BB|A|2052
4V65|1|BB|G|2053
4V65|1|BB|A|2054
4V65|1|BB|C|2055
4V65|1|BB|G|2056
4V65|1|BB|G|2057
4V65|1|BB|A|2058
4V65|1|BB|A|2059
4V65|1|BB|A|2060
4V65|1|BB|G|2061
4V65|1|BB|A|2062
4V65|1|BB|C|2063
4V65|1|BB|C|2064
4V65|1|BB|C|2065
4V65|1|BB|C|2066
4V65|1|BB|G|2067
*
4V65|1|BB|C|2443
4V65|1|BB|G|2444
4V65|1|BB|G|2445
4V65|1|BB|G|2446
4V65|1|BB|G|2447
4V65|1|BB|A|2448
4V65|1|BB|U|2449
4V65|1|BB|A|2450
4V65|1|BB|A|2451
4V65|1|BB|C|2452
4V65|1|BB|A|2453
4V65|1|BB|G|2454
4V65|1|BB|G|2455
4V65|1|BB|C|2456
4V65|1|BB|U|2457
4V65|1|BB|G|2458
4V65|1|BB|A|2459
4V65|1|BB|U|2460
4V65|1|BB|A|2461
4V65|1|BB|C|2462
*
4V65|1|BB|G|2488
4V65|1|BB|U|2489
4V65|1|BB|G|2490
4V65|1|BB|U|2491
4V65|1|BB|U|2492
4V65|1|BB|U|2493
4V65|1|BB|G|2494
4V65|1|BB|G|2495
4V65|1|BB|C|2496
4V65|1|BB|A|2497
4V65|1|BB|C|2498
4V65|1|BB|C|2499
4V65|1|BB|U|2500
4V65|1|BB|C|2501
4V65|1|BB|G|2502
4V65|1|BB|A|2503
4V65|1|BB|U|2504
4V65|1|BB|G|2505
4V65|1|BB|U|2506
4V65|1|BB|C|2507
4V65|1|BB|G|2508
4V65|1|BB|G|2509
4V65|1|BB|C|2510
4V65|1|BB|U|2511
4V65|1|BB|C|2512
4V65|1|BB|A|2513
4V65|1|BB|U|2514
4V65|1|BB|C|2515
4V65|1|BB|A|2516
4V65|1|BB|C|2517
*
4V65|1|BB|G|2567
4V65|1|BB|U|2568
4V65|1|BB|G|2569
4V65|1|BB|G|2570
4V65|1|BB|U|2571
4V65|1|BB|A|2572
4V65|1|BB|C|2573
4V65|1|BB|G|2574
4V65|1|BB|C|2575
4V65|1|BB|G|2576
4V65|1|BB|A|2577
4V65|1|BB|G|2578
4V65|1|BB|C|2579
4V65|1|BB|U|2580
4V65|1|BB|G|2581
4V65|1|BB|G|2582
4V65|1|BB|G|2583
4V65|1|BB|U|2584
4V65|1|BB|U|2585
4V65|1|BB|U|2586
4V65|1|BB|A|2587
4V65|1|BB|G|2588
*
4V65|1|BB|C|2606
4V65|1|BB|G|2607
4V65|1|BB|G|2608
4V65|1|BB|U|2609
4V65|1|BB|C|2610
4V65|1|BB|C|2611
4V65|1|BB|C|2612
4V65|1|BB|U|2613
4V65|1|BB|A|2614
4V65|1|BB|U|2615
4V65|1|BB|C|2616
4V65|1|BB|U|2617
4V65|1|BB|G|2618
4V65|1|BB|C|2619
4V65|1|BB|C|2620

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L4

Chain B6

50S ribosomal protein L13

Chain BE

50S ribosomal protein L15

Chain BF

50S ribosomal protein L16

Chain BL

50S ribosomal protein L22

Chain BN

50S ribosomal protein L2

Chain BT

50S ribosomal protein L32

Chain BY

50S ribosomal protein L3