J5_4V65_016
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUGAACCUUUACUAUAG*UGGGUAGUUUGACUGGGGCGGUCUC*GAGCAC*GUCAUAGUGAUCCGGUG*CAUCGCUCAACGGAUAAAAGGUACUCC
- Length
- 92 nucleotides
- Bulged bases
- 4V65|1|BB|G|2069, 4V65|1|BB|U|2076, 4V65|1|BB|U|2245, 4V65|1|BB|U|2249, 4V65|1|BB|G|2250, 4V65|1|BB|A|2426, 4V65|1|BB|C|2427, 4V65|1|BB|U|2431, 4V65|1|BB|A|2439, 4V65|1|BB|C|2442
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V65|1|BB|G|2067
4V65|1|BB|U|2068
4V65|1|BB|G|2069
4V65|1|BB|A|2070
4V65|1|BB|A|2071
4V65|1|BB|C|2072
4V65|1|BB|C|2073
4V65|1|BB|U|2074
4V65|1|BB|U|2075
4V65|1|BB|U|2076
4V65|1|BB|A|2077
4V65|1|BB|C|2078
4V65|1|BB|U|2079
4V65|1|BB|A|2080
4V65|1|BB|U|2081
4V65|1|BB|A|2082
4V65|1|BB|G|2083
*
4V65|1|BB|U|2236
4V65|1|BB|G|2237
4V65|1|BB|G|2238
4V65|1|BB|G|2239
4V65|1|BB|U|2240
4V65|1|BB|A|2241
4V65|1|BB|G|2242
4V65|1|BB|U|2243
4V65|1|BB|U|2244
4V65|1|BB|U|2245
4V65|1|BB|G|2246
4V65|1|BB|A|2247
4V65|1|BB|C|2248
4V65|1|BB|U|2249
4V65|1|BB|G|2250
4V65|1|BB|G|2251
4V65|1|BB|G|2252
4V65|1|BB|G|2253
4V65|1|BB|C|2254
4V65|1|BB|G|2255
4V65|1|BB|G|2256
4V65|1|BB|U|2257
4V65|1|BB|C|2258
4V65|1|BB|U|2259
4V65|1|BB|C|2260
*
4V65|1|BB|G|2280
4V65|1|BB|A|2281
4V65|1|BB|G|2282
4V65|1|BB|C|2283
4V65|1|BB|A|2284
4V65|1|BB|C|2285
*
4V65|1|BB|G|2383
4V65|1|BB|U|2384
4V65|1|BB|C|2385
4V65|1|BB|A|2386
4V65|1|BB|U|2387
4V65|1|BB|A|2388
4V65|1|BB|G|2389
4V65|1|BB|U|2390
4V65|1|BB|G|2391
4V65|1|BB|A|2392
4V65|1|BB|U|2393
4V65|1|BB|C|2394
4V65|1|BB|C|2395
4V65|1|BB|G|2396
4V65|1|BB|G|2397
4V65|1|BB|U|2398
4V65|1|BB|G|2399
*
4V65|1|BB|C|2417
4V65|1|BB|A|2418
4V65|1|BB|U|2419
4V65|1|BB|C|2420
4V65|1|BB|G|2421
4V65|1|BB|C|2422
4V65|1|BB|U|2423
4V65|1|BB|C|2424
4V65|1|BB|A|2425
4V65|1|BB|A|2426
4V65|1|BB|C|2427
4V65|1|BB|G|2428
4V65|1|BB|G|2429
4V65|1|BB|A|2430
4V65|1|BB|U|2431
4V65|1|BB|A|2432
4V65|1|BB|A|2433
4V65|1|BB|A|2434
4V65|1|BB|A|2435
4V65|1|BB|G|2436
4V65|1|BB|G|2437
4V65|1|BB|U|2438
4V65|1|BB|A|2439
4V65|1|BB|C|2440
4V65|1|BB|U|2441
4V65|1|BB|C|2442
4V65|1|BB|C|2443
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain AE
- Transfer RNA; tRNA
- Chain AP
- Transfer RNA; tRNA
- Chain B1
- 50S ribosomal protein L4
- Chain BE
- 50S ribosomal protein L15
- Chain BF
- 50S ribosomal protein L16
- Chain BN
- 50S ribosomal protein L2
- Chain BP
- 50S ribosomal protein L27
- Chain BS
- 50S ribosomal protein L31
- Chain BU
- 50S ribosomal protein L33
- Chain BW
- 50S ribosomal protein L35
Coloring options: