J5_4V66_008
3D structure
- PDB id
- 4V66 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome and the tRNAs in Post-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGCAAGACGGAAAGACCCCG*CGGGGAUAACAGGCUGAUACC*GGUGUUUGGCACCUCGAUGUCGGCUCAUCAC*GUGGUACGCGAGCUGGGUUUAG*CGGUCCCUAUCUGCC
- Length
- 109 nucleotides
- Bulged bases
- 4V66|1|BB|G|2049, 4V66|1|BB|A|2052, 4V66|1|BB|A|2054, 4V66|1|BB|C|2055, 4V66|1|BB|A|2059, 4V66|1|BB|C|2064, 4V66|1|BB|G|2445, 4V66|1|BB|A|2448, 4V66|1|BB|A|2451, 4V66|1|BB|A|2453, 4V66|1|BB|G|2454, 4V66|1|BB|C|2456, 4V66|1|BB|U|2489, 4V66|1|BB|U|2491, 4V66|1|BB|U|2492, 4V66|1|BB|G|2502, 4V66|1|BB|G|2569, 4V66|1|BB|A|2572, 4V66|1|BB|C|2573, 4V66|1|BB|G|2578, 4V66|1|BB|U|2580, 4V66|1|BB|U|2586, 4V66|1|BB|A|2587, 4V66|1|BB|U|2609, 4V66|1|BB|C|2611, 4V66|1|BB|C|2612, 4V66|1|BB|U|2613, 4V66|1|BB|U|2615
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V66|1|BB|G|2048
4V66|1|BB|G|2049
4V66|1|BB|C|2050
4V66|1|BB|A|2051
4V66|1|BB|A|2052
4V66|1|BB|G|2053
4V66|1|BB|A|2054
4V66|1|BB|C|2055
4V66|1|BB|G|2056
4V66|1|BB|G|2057
4V66|1|BB|A|2058
4V66|1|BB|A|2059
4V66|1|BB|A|2060
4V66|1|BB|G|2061
4V66|1|BB|A|2062
4V66|1|BB|C|2063
4V66|1|BB|C|2064
4V66|1|BB|C|2065
4V66|1|BB|C|2066
4V66|1|BB|G|2067
*
4V66|1|BB|C|2443
4V66|1|BB|G|2444
4V66|1|BB|G|2445
4V66|1|BB|G|2446
4V66|1|BB|G|2447
4V66|1|BB|A|2448
4V66|1|BB|U|2449
4V66|1|BB|A|2450
4V66|1|BB|A|2451
4V66|1|BB|C|2452
4V66|1|BB|A|2453
4V66|1|BB|G|2454
4V66|1|BB|G|2455
4V66|1|BB|C|2456
4V66|1|BB|U|2457
4V66|1|BB|G|2458
4V66|1|BB|A|2459
4V66|1|BB|U|2460
4V66|1|BB|A|2461
4V66|1|BB|C|2462
4V66|1|BB|C|2463
*
4V66|1|BB|G|2487
4V66|1|BB|G|2488
4V66|1|BB|U|2489
4V66|1|BB|G|2490
4V66|1|BB|U|2491
4V66|1|BB|U|2492
4V66|1|BB|U|2493
4V66|1|BB|G|2494
4V66|1|BB|G|2495
4V66|1|BB|C|2496
4V66|1|BB|A|2497
4V66|1|BB|C|2498
4V66|1|BB|C|2499
4V66|1|BB|U|2500
4V66|1|BB|C|2501
4V66|1|BB|G|2502
4V66|1|BB|A|2503
4V66|1|BB|U|2504
4V66|1|BB|G|2505
4V66|1|BB|U|2506
4V66|1|BB|C|2507
4V66|1|BB|G|2508
4V66|1|BB|G|2509
4V66|1|BB|C|2510
4V66|1|BB|U|2511
4V66|1|BB|C|2512
4V66|1|BB|A|2513
4V66|1|BB|U|2514
4V66|1|BB|C|2515
4V66|1|BB|A|2516
4V66|1|BB|C|2517
*
4V66|1|BB|G|2567
4V66|1|BB|U|2568
4V66|1|BB|G|2569
4V66|1|BB|G|2570
4V66|1|BB|U|2571
4V66|1|BB|A|2572
4V66|1|BB|C|2573
4V66|1|BB|G|2574
4V66|1|BB|C|2575
4V66|1|BB|G|2576
4V66|1|BB|A|2577
4V66|1|BB|G|2578
4V66|1|BB|C|2579
4V66|1|BB|U|2580
4V66|1|BB|G|2581
4V66|1|BB|G|2582
4V66|1|BB|G|2583
4V66|1|BB|U|2584
4V66|1|BB|U|2585
4V66|1|BB|U|2586
4V66|1|BB|A|2587
4V66|1|BB|G|2588
*
4V66|1|BB|C|2606
4V66|1|BB|G|2607
4V66|1|BB|G|2608
4V66|1|BB|U|2609
4V66|1|BB|C|2610
4V66|1|BB|C|2611
4V66|1|BB|C|2612
4V66|1|BB|U|2613
4V66|1|BB|A|2614
4V66|1|BB|U|2615
4V66|1|BB|C|2616
4V66|1|BB|U|2617
4V66|1|BB|G|2618
4V66|1|BB|C|2619
4V66|1|BB|C|2620
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain AA
- Transfer RNA; tRNA
- Chain B1
- 50S ribosomal protein L4
- Chain B6
- 50S ribosomal protein L13
- Chain BA
- 5S ribosomal RNA; 5S rRNA
- Chain BE
- 50S ribosomal protein L15
- Chain BF
- 50S ribosomal protein L16
- Chain BL
- 50S ribosomal protein L22
- Chain BN
- 50S ribosomal protein L2
- Chain BT
- 50S ribosomal protein L32
- Chain BY
- 50S ribosomal protein L3
Coloring options: