J5_4V66_011
3D structure
- PDB id
- 4V66 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome and the tRNAs in Post-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAUGGCUCAGAUUGA*UAAUCGGAAUUACUGGGCGUAAAGCGCACGCAG*UCAGGUGCGAAAGC*GCCGUAAACGAUGUC*GACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUG
- Length
- 118 nucleotides
- Bulged bases
- 4V66|1|A1|A|26, 4V66|1|A1|G|27, 4V66|1|A1|G|31, 4V66|1|A1|A|553, 4V66|1|A1|A|554, 4V66|1|A1|A|560, 4V66|1|A1|U|561, 4V66|1|A1|C|564, 4V66|1|A1|U|565, 4V66|1|A1|G|566, 4V66|1|A1|C|576, 4V66|1|A1|U|813, 4V66|1|A1|A|815, 4V66|1|A1|A|816, 4V66|1|A1|C|880, 4V66|1|A1|C|893, 4V66|1|A1|A|915, 4V66|1|A1|U|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V66|1|A1|C|18
4V66|1|A1|A|19
4V66|1|A1|U|20
4V66|1|A1|G|21
4V66|1|A1|G|22
4V66|1|A1|C|23
4V66|1|A1|U|24
4V66|1|A1|C|25
4V66|1|A1|A|26
4V66|1|A1|G|27
4V66|1|A1|A|28
4V66|1|A1|U|29
4V66|1|A1|U|30
4V66|1|A1|G|31
4V66|1|A1|A|32
*
4V66|1|A1|U|552
4V66|1|A1|A|553
4V66|1|A1|A|554
4V66|1|A1|U|555
4V66|1|A1|C|556
4V66|1|A1|G|557
4V66|1|A1|G|558
4V66|1|A1|A|559
4V66|1|A1|A|560
4V66|1|A1|U|561
4V66|1|A1|U|562
4V66|1|A1|A|563
4V66|1|A1|C|564
4V66|1|A1|U|565
4V66|1|A1|G|566
4V66|1|A1|G|567
4V66|1|A1|G|568
4V66|1|A1|C|569
4V66|1|A1|G|570
4V66|1|A1|U|571
4V66|1|A1|A|572
4V66|1|A1|A|573
4V66|1|A1|A|574
4V66|1|A1|G|575
4V66|1|A1|C|576
4V66|1|A1|G|577
4V66|1|A1|C|578
4V66|1|A1|A|579
4V66|1|A1|C|580
4V66|1|A1|G|581
4V66|1|A1|C|582
4V66|1|A1|A|583
4V66|1|A1|G|584
*
4V66|1|A1|U|757
4V66|1|A1|C|758
4V66|1|A1|A|759
4V66|1|A1|G|760
4V66|1|A1|G|761
4V66|1|A1|U|762
4V66|1|A1|G|763
4V66|1|A1|C|764
4V66|1|A1|G|765
4V66|1|A1|A|766
4V66|1|A1|A|767
4V66|1|A1|A|768
4V66|1|A1|G|769
4V66|1|A1|C|770
*
4V66|1|A1|G|809
4V66|1|A1|C|810
4V66|1|A1|C|811
4V66|1|A1|G|812
4V66|1|A1|U|813
4V66|1|A1|A|814
4V66|1|A1|A|815
4V66|1|A1|A|816
4V66|1|A1|C|817
4V66|1|A1|G|818
4V66|1|A1|A|819
4V66|1|A1|U|820
4V66|1|A1|G|821
4V66|1|A1|U|822
4V66|1|A1|C|823
*
4V66|1|A1|G|877
4V66|1|A1|A|878
4V66|1|A1|C|879
4V66|1|A1|C|880
4V66|1|A1|G|881
4V66|1|A1|C|882
4V66|1|A1|C|883
4V66|1|A1|U|884
4V66|1|A1|G|885
4V66|1|A1|G|886
4V66|1|A1|G|887
4V66|1|A1|G|888
4V66|1|A1|A|889
4V66|1|A1|G|890
4V66|1|A1|U|891
4V66|1|A1|A|892
4V66|1|A1|C|893
4V66|1|A1|G|894
4V66|1|A1|G|895
4V66|1|A1|C|896
4V66|1|A1|C|897
4V66|1|A1|G|898
4V66|1|A1|C|899
4V66|1|A1|A|900
4V66|1|A1|A|901
4V66|1|A1|G|902
4V66|1|A1|G|903
4V66|1|A1|U|904
4V66|1|A1|U|905
4V66|1|A1|A|906
4V66|1|A1|A|907
4V66|1|A1|A|908
4V66|1|A1|A|909
4V66|1|A1|C|910
4V66|1|A1|U|911
4V66|1|A1|C|912
4V66|1|A1|A|913
4V66|1|A1|A|914
4V66|1|A1|A|915
4V66|1|A1|U|916
4V66|1|A1|G|917
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain AD
- 30S ribosomal protein S12
- Chain AH
- 30S ribosomal protein S15
- Chain AJ
- 30S ribosomal protein S17
- Chain AR
- 30S ribosomal protein S4
- Chain AS
- 30S ribosomal protein S5
- Chain AV
- 30S ribosomal protein S8
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BN
- 50S ribosomal protein L2
Coloring options: