3D structure

PDB id
4V67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a translation termination complex formed with release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V67_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0859
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4V67|1|AA|C|36
4V67|1|AA|U|37
4V67|1|AA|G|38
4V67|1|AA|G|39
*
4V67|1|AA|C|403
4V67|1|AA|U|404
4V67|1|AA|U|405
4V67|1|AA|G|406
*
4V67|1|AA|C|436
4V67|1|AA|U|437
4V67|1|AA|G|438
4V67|1|AA|A|439
4V67|1|AA|A|440
4V67|1|AA|C|442
*
4V67|1|AA|G|492
4V67|1|AA|G|493
4V67|1|AA|U|494
4V67|1|AA|A|495
4V67|1|AA|A|496
4V67|1|AA|U|497
4V67|1|AA|A|498
4V67|1|AA|G|500
*
4V67|1|AA|C|545
4V67|1|AA|G|546
4V67|1|AA|A|547
4V67|1|AA|G|548

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AL
30S ribosomal protein S12
Chain DI
50S ribosomal protein L9

Coloring options:


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