J5_4V68_002

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UGCAAG*CGGACGGG*CAG*CAC*GGCAGCA

Length

27 nucleotides

Bulged bases

4V68|1|AA|A|109, 4V68|1|AA|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V68|1|AA|U|56
4V68|1|AA|G|57
4V68|1|AA|C|58
4V68|1|AA|A|59
4V68|1|AA|A|60
4V68|1|AA|G|61
*
4V68|1|AA|C|106
4V68|1|AA|G|107
4V68|1|AA|G|108
4V68|1|AA|A|109
4V68|1|AA|C|110
4V68|1|AA|G|111
4V68|1|AA|G|112
4V68|1|AA|G|113
*
4V68|1|AA|C|314
4V68|1|AA|A|315
4V68|1|AA|G|316
*
4V68|1|AA|C|337
4V68|1|AA|A|338
4V68|1|AA|C|339
*
4V68|1|AA|G|350
4V68|1|AA|G|351
4V68|1|AA|C|352
4V68|1|AA|A|353
4V68|1|AA|G|354
4V68|1|AA|C|355
4V68|1|AA|A|356

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20

Chain AZ

Elongation factor Tu-A

Chain BO

50S ribosomal protein L14

Chain BT

50S ribosomal protein L19