J5_4V68_003

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V68|1|BA|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V68_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0845

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V68|1|BA|C|47
4V68|1|BA|G|48
4V68|1|BA|A|49
4V68|1|BA|U|50
4V68|1|BA|G|51
4V68|1|BA|A|52
4V68|1|BA|A|53
4V68|1|BA|G|54
*
4V68|1|BA|C|116
4V68|1|BA|G|117
4V68|1|BA|A|118
4V68|1|BA|A|119
4V68|1|BA|U|120
4V68|1|BA|G|121
*
4V68|1|BA|C|130
4V68|1|BA|G|131
*
4V68|1|BA|C|148
4V68|1|BA|A|149
4V68|1|BA|C|150
*
4V68|1|BA|G|176
4V68|1|BA|G|177
4V68|1|BA|G|178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23