J5_4V69_004
3D structure
- PDB id
- 4V69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex-bound E.coli 70S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 4V69|1|BB|U|50
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V69_004 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.2103
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V69|1|BB|C|47
4V69|1|BB|G|48
4V69|1|BB|A|49
4V69|1|BB|U|50
4V69|1|BB|G|51
4V69|1|BB|A|52
4V69|1|BB|A|53
4V69|1|BB|G|54
*
4V69|1|BB|C|116
4V69|1|BB|G|117
4V69|1|BB|A|118
4V69|1|BB|A|119
4V69|1|BB|U|120
4V69|1|BB|G|121
*
4V69|1|BB|C|130
4V69|1|BB|A|131
*
4V69|1|BB|U|148
4V69|1|BB|A|149
4V69|1|BB|U|150
*
4V69|1|BB|A|176
4V69|1|BB|G|177
4V69|1|BB|G|178
Current chains
- Chain BB
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
Coloring options: