J5_4V6F_011

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6F_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0821

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V6F|1|CA|C|36
4V6F|1|CA|U|37
4V6F|1|CA|G|38
4V6F|1|CA|G|39
*
4V6F|1|CA|C|403
4V6F|1|CA|U|404
4V6F|1|CA|U|405
4V6F|1|CA|G|406
*
4V6F|1|CA|C|436
4V6F|1|CA|U|437
4V6F|1|CA|G|438
4V6F|1|CA|A|439
4V6F|1|CA|A|440
4V6F|1|CA|C|442
*
4V6F|1|CA|G|492
4V6F|1|CA|G|493
4V6F|1|CA|U|494
4V6F|1|CA|A|495
4V6F|1|CA|A|496
4V6F|1|CA|U|497
4V6F|1|CA|A|498
4V6F|1|CA|G|500
*
4V6F|1|CA|C|545
4V6F|1|CA|G|546
4V6F|1|CA|A|547
4V6F|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain AK

50S RIBOSOMAL PROTEIN L9

Chain CG

30S ribosomal protein S4

Chain CO

30S ribosomal protein S12