J5_4V6I_001

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAUG*CGAAUGGCU*AGAG*CACAU*AAGGCAG

Length

29 nucleotides

Bulged bases

4V6I|1|CA|U|56, 4V6I|1|CA|C|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|C|54
4V6I|1|CA|A|55
4V6I|1|CA|U|56
4V6I|1|CA|G|57
*
4V6I|1|CA|C|90
4V6I|1|CA|G|91
4V6I|1|CA|A|92
4V6I|1|CA|A|93
4V6I|1|CA|U|94
4V6I|1|CA|G|95
4V6I|1|CA|G|96
4V6I|1|CA|C|97
4V6I|1|CA|U|98
*
4V6I|1|CA|A|385
4V6I|1|CA|G|386
4V6I|1|CA|A|387
4V6I|1|CA|G|388
*
4V6I|1|CA|C|409
4V6I|1|CA|A|410
4V6I|1|CA|C|411
4V6I|1|CA|A|412
4V6I|1|CA|U|413
*
4V6I|1|CA|A|420
4V6I|1|CA|A|421
4V6I|1|CA|G|422
4V6I|1|CA|G|423
4V6I|1|CA|C|424
4V6I|1|CA|A|425
4V6I|1|CA|G|426

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AU

40S ribosomal protein S24

Chain BM

60S ribosomal protein rpL23 (L14p)

Chain BZ

60S ribosomal protein rpL24 (L24e)