J5_4V6I_003

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GC*GCAGAUC

Length

23 nucleotides

Bulged bases

4V6I|1|DA|G|661, 4V6I|1|DA|G|800, 4V6I|1|DA|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|658
4V6I|1|DA|G|659
4V6I|1|DA|A|660
4V6I|1|DA|G|661
4V6I|1|DA|U|662
4V6I|1|DA|C|663
*
4V6I|1|DA|G|799
4V6I|1|DA|G|800
4V6I|1|DA|A|801
4V6I|1|DA|C|802
*
4V6I|1|DA|G|941
4V6I|1|DA|U|942
4V6I|1|DA|U|943
4V6I|1|DA|C|944
*
4V6I|1|DA|G|1375
4V6I|1|DA|C|1376
*
4V6I|1|DA|G|1431
4V6I|1|DA|C|1432
4V6I|1|DA|A|1433
4V6I|1|DA|G|1434
4V6I|1|DA|A|1435
4V6I|1|DA|U|1436
4V6I|1|DA|C|1437

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BL

60S ribosomal protein rpL13 (L13e)

Chain BO

60S ribosomal protein rpL28 (L15p)

Chain Bh

60S ribosomal protein pL32 (L32e)

Chain DB

5.8S ribosomal RNA; 5.8S rRNA