J5_4V6I_004

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GCAAAAUAG*UG*UG*CGGACAAGG*CAC

Length

25 nucleotides

Bulged bases

4V6I|1|DA|G|2116, 4V6I|1|DA|G|2121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|1906
4V6I|1|DA|C|1907
4V6I|1|DA|A|1908
4V6I|1|DA|A|1909
4V6I|1|DA|A|1910
4V6I|1|DA|A|1911
4V6I|1|DA|U|1912
4V6I|1|DA|A|1913
4V6I|1|DA|G|1914
*
4V6I|1|DA|U|1938
4V6I|1|DA|G|1939
*
4V6I|1|DA|U|2109
4V6I|1|DA|G|2110
*
4V6I|1|DA|C|2114
4V6I|1|DA|G|2115
4V6I|1|DA|G|2116
4V6I|1|DA|A|2117
4V6I|1|DA|C|2118
4V6I|1|DA|A|2119
4V6I|1|DA|A|2120
4V6I|1|DA|G|2121
4V6I|1|DA|G|2122
*
4V6I|1|DA|C|2331
4V6I|1|DA|A|2332
4V6I|1|DA|C|2333

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BM

60S ribosomal protein rpL23 (L14p)

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain BZ

60S ribosomal protein rpL24 (L24e)

Chain CA

Small subunit ribosomal RNA; SSU rRNA