J5_4V6I_005
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 4V6I|1|DA|A|2817, 4V6I|1|DA|U|2873, 4V6I|1|DA|U|2978, 4V6I|1|DA|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|A|2399
4V6I|1|DA|G|2400
4V6I|1|DA|A|2401
4V6I|1|DA|A|2402
4V6I|1|DA|G|2403
4V6I|1|DA|A|2404
4V6I|1|DA|C|2405
4V6I|1|DA|C|2406
*
4V6I|1|DA|G|2815
4V6I|1|DA|G|2816
4V6I|1|DA|A|2817
4V6I|1|DA|U|2818
4V6I|1|DA|A|2819
4V6I|1|DA|A|2820
4V6I|1|DA|C|2821
4V6I|1|DA|U|2822
4V6I|1|DA|G|2823
*
4V6I|1|DA|C|2867
4V6I|1|DA|U|2868
4V6I|1|DA|U|2869
4V6I|1|DA|C|2870
4V6I|1|DA|G|2871
4V6I|1|DA|A|2872
4V6I|1|DA|U|2873
4V6I|1|DA|G|2874
4V6I|1|DA|U|2875
*
4V6I|1|DA|G|2952
4V6I|1|DA|U|2953
4V6I|1|DA|U|2954
4V6I|1|DA|U|2955
4V6I|1|DA|A|2956
4V6I|1|DA|G|2957
*
4V6I|1|DA|U|2975
4V6I|1|DA|A|2976
4V6I|1|DA|G|2977
4V6I|1|DA|U|2978
4V6I|1|DA|U|2979
4V6I|1|DA|U|2980
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain BC
- 60S ribosomal protein rpL3 (L3p)
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BI
- 60S ribosomal protein rpL10 (L10e)
- Chain BV
- 60S ribosomal protein rpL17 (L22p)
- Chain CB
- Transfer RNA; tRNA
Coloring options: