J5_4V6I_006
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UUGA*UUUGG*CACA*UG*CAGAAAA
- Length
- 22 nucleotides
- Bulged bases
- 4V6I|1|DA|G|2418, 4V6I|1|DA|A|2799, 4V6I|1|DA|G|2800, 4V6I|1|DA|A|2801, 4V6I|1|DA|A|2802
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|U|2416
4V6I|1|DA|U|2417
4V6I|1|DA|G|2418
4V6I|1|DA|A|2419
*
4V6I|1|DA|U|2611
4V6I|1|DA|U|2612
4V6I|1|DA|U|2613
4V6I|1|DA|G|2614
4V6I|1|DA|G|2615
*
4V6I|1|DA|C|2625
4V6I|1|DA|A|2626
4V6I|1|DA|C|2627
4V6I|1|DA|A|2628
*
4V6I|1|DA|U|2650
4V6I|1|DA|G|2651
*
4V6I|1|DA|C|2798
4V6I|1|DA|A|2799
4V6I|1|DA|G|2800
4V6I|1|DA|A|2801
4V6I|1|DA|A|2802
4V6I|1|DA|A|2803
4V6I|1|DA|A|2804
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain BI
- 60S ribosomal protein rpL10 (L10e)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain BU
- 60S ribosomal protein rpL21 (L21e)
- Chain Br
- 60S ribosomal protein rpL42 (L44e)
- Chain CB
- Transfer RNA; tRNA
Coloring options: