J5_4V6K_001

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V6K|1|AB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6K_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1597

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V6K|1|AB|C|47
4V6K|1|AB|G|48
4V6K|1|AB|A|49
4V6K|1|AB|U|50
4V6K|1|AB|G|51
4V6K|1|AB|A|52
4V6K|1|AB|A|53
4V6K|1|AB|G|54
*
4V6K|1|AB|C|116
4V6K|1|AB|G|117
4V6K|1|AB|A|118
4V6K|1|AB|A|119
4V6K|1|AB|U|120
4V6K|1|AB|G|121
*
4V6K|1|AB|C|130
4V6K|1|AB|A|131
*
4V6K|1|AB|U|148
4V6K|1|AB|A|149
4V6K|1|AB|U|150
*
4V6K|1|AB|A|176
4V6K|1|AB|G|177
4V6K|1|AB|G|178

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain Ae

50S ribosomal protein L34