J5_4V6K_002
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4V6K|1|AB|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6K_002 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1424
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V6K|1|AB|C|584
4V6K|1|AB|G|585
4V6K|1|AB|A|586
4V6K|1|AB|C|587
4V6K|1|AB|U|588
4V6K|1|AB|U|589
*
4V6K|1|AB|A|668
4V6K|1|AB|G|669
4V6K|1|AB|A|670
4V6K|1|AB|C|671
*
4V6K|1|AB|G|809
4V6K|1|AB|U|810
4V6K|1|AB|U|811
4V6K|1|AB|C|812
*
4V6K|1|AB|G|1195
4V6K|1|AB|C|1196
*
4V6K|1|AB|G|1250
4V6K|1|AB|C|1251
4V6K|1|AB|G|1252
4V6K|1|AB|A|1253
4V6K|1|AB|A|1254
4V6K|1|AB|U|1255
4V6K|1|AB|G|1256
Current chains
- Chain AB
- ribosomal RNA 23S
Nearby chains
- Chain AF
- 50S ribosomal protein L4
- Chain AM
- 50S ribosomal protein L15
- Chain AR
- 50S ribosomal protein L20
- Chain AS
- 50S ribosomal protein L21
- Chain Af
- 50S ribosomal protein L35
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