J5_4V6K_004
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACAG*(OMC)CUCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 4V6K|1|AB|A|2062, 4V6K|1|AB|A|2448, 4V6K|1|AB|U|2609
- QA status
- Modified nucleotides: H2U, OMC, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6K|1|AB|G|2057
4V6K|1|AB|A|2058
4V6K|1|AB|A|2059
4V6K|1|AB|A|2060
4V6K|1|AB|G|2061
4V6K|1|AB|A|2062
4V6K|1|AB|C|2063
4V6K|1|AB|C|2064
*
4V6K|1|AB|G|2446
4V6K|1|AB|G|2447
4V6K|1|AB|A|2448
4V6K|1|AB|H2U|2449
4V6K|1|AB|A|2450
4V6K|1|AB|A|2451
4V6K|1|AB|C|2452
4V6K|1|AB|A|2453
4V6K|1|AB|G|2454
*
4V6K|1|AB|OMC|2498
4V6K|1|AB|C|2499
4V6K|1|AB|U|2500
4V6K|1|AB|C|2501
4V6K|1|AB|G|2502
4V6K|1|AB|2MA|2503
4V6K|1|AB|PSU|2504
4V6K|1|AB|G|2505
4V6K|1|AB|U|2506
4V6K|1|AB|C|2507
*
4V6K|1|AB|G|2582
4V6K|1|AB|G|2583
4V6K|1|AB|U|2584
4V6K|1|AB|U|2585
4V6K|1|AB|U|2586
4V6K|1|AB|A|2587
4V6K|1|AB|G|2588
*
4V6K|1|AB|C|2606
4V6K|1|AB|G|2607
4V6K|1|AB|G|2608
4V6K|1|AB|U|2609
4V6K|1|AB|C|2610
4V6K|1|AB|C|2611
Current chains
- Chain AB
- ribosomal RNA 23S
Nearby chains
- Chain AD
- 50S ribosomal protein L2
- Chain AE
- 50S ribosomal protein L3
- Chain AF
- 50S ribosomal protein L4
- Chain AM
- 50S ribosomal protein L15
- Chain AN
- 50S ribosomal protein L16
- Chain AT
- 50S ribosomal protein L22
- Chain Ac
- 50S ribosomal protein L32
- Chain BE
- Transfer RNA; tRNA
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