J5_4V6K_006

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6K_006 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1678

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V6K|1|BA|C|36
4V6K|1|BA|U|37
4V6K|1|BA|G|38
4V6K|1|BA|G|39
*
4V6K|1|BA|C|403
4V6K|1|BA|G|404
4V6K|1|BA|U|405
4V6K|1|BA|G|406
*
4V6K|1|BA|C|436
4V6K|1|BA|U|437
4V6K|1|BA|U|438
4V6K|1|BA|U|439
4V6K|1|BA|C|440
4V6K|1|BA|A|441
4V6K|1|BA|G|442
*
4V6K|1|BA|C|492
4V6K|1|BA|A|493
4V6K|1|BA|G|494
4V6K|1|BA|A|495
4V6K|1|BA|A|496
4V6K|1|BA|G|497
4V6K|1|BA|A|498
4V6K|1|BA|A|499
4V6K|1|BA|G|500
*
4V6K|1|BA|C|545
4V6K|1|BA|A|546
4V6K|1|BA|A|547
4V6K|1|BA|G|548

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

Elongation factor Tu 2

Chain BH

30S ribosomal protein S4

Chain BP

30S ribosomal protein S12