J5_4V6M_004

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V6M|1|B8|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6M_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0971

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V6M|1|B8|C|47
4V6M|1|B8|G|48
4V6M|1|B8|A|49
4V6M|1|B8|U|50
4V6M|1|B8|G|51
4V6M|1|B8|A|52
4V6M|1|B8|A|53
4V6M|1|B8|G|54
*
4V6M|1|B8|C|116
4V6M|1|B8|G|117
4V6M|1|B8|A|118
4V6M|1|B8|A|119
4V6M|1|B8|U|120
4V6M|1|B8|G|121
*
4V6M|1|B8|C|130
4V6M|1|B8|A|131
*
4V6M|1|B8|U|148
4V6M|1|B8|A|149
4V6M|1|B8|U|150
*
4V6M|1|B8|A|176
4V6M|1|B8|G|177
4V6M|1|B8|G|178

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23