J5_4V6N_001

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V6N|1|AB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6N_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1737

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V6N|1|AB|C|47
4V6N|1|AB|G|48
4V6N|1|AB|A|49
4V6N|1|AB|U|50
4V6N|1|AB|G|51
4V6N|1|AB|A|52
4V6N|1|AB|A|53
4V6N|1|AB|G|54
*
4V6N|1|AB|C|116
4V6N|1|AB|G|117
4V6N|1|AB|A|118
4V6N|1|AB|A|119
4V6N|1|AB|U|120
4V6N|1|AB|G|121
*
4V6N|1|AB|C|130
4V6N|1|AB|A|131
*
4V6N|1|AB|U|148
4V6N|1|AB|A|149
4V6N|1|AB|U|150
*
4V6N|1|AB|A|176
4V6N|1|AB|G|177
4V6N|1|AB|G|178

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L34

Chain AV

50S ribosomal protein L23