Loop J5_4V6N

3D structure

PDB id: 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.1 Å

Loop

Sequence: GCACGAAG*UUGACU*AGGUG*CAGGUCAUAGUGAUCC*GCUCAAC
Length: 42 nucleotides
Bulged bases: 4V6N|1|AB|A|2288, 4V6N|1|AB|A|2388, 4V6N|1|AB|A|2426
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V6N|1|AB|G|2282
4V6N|1|AB|C|2283
4V6N|1|AB|A|2284
4V6N|1|AB|C|2285
4V6N|1|AB|G|2286
4V6N|1|AB|A|2287
4V6N|1|AB|A|2288
4V6N|1|AB|G|2289
*
4V6N|1|AB|U|2343
4V6N|1|AB|U|2344
4V6N|1|AB|G|2345
4V6N|1|AB|A|2346
4V6N|1|AB|C|2347
4V6N|1|AB|U|2348
*
4V6N|1|AB|A|2369
4V6N|1|AB|G|2370
4V6N|1|AB|G|2371
4V6N|1|AB|U|2372
4V6N|1|AB|G|2373
*
4V6N|1|AB|C|2380
4V6N|1|AB|A|2381
4V6N|1|AB|G|2382
4V6N|1|AB|G|2383
4V6N|1|AB|U|2384
4V6N|1|AB|C|2385
4V6N|1|AB|A|2386
4V6N|1|AB|U|2387
4V6N|1|AB|A|2388
4V6N|1|AB|G|2389
4V6N|1|AB|U|2390
4V6N|1|AB|G|2391
4V6N|1|AB|A|2392
4V6N|1|AB|U|2393
4V6N|1|AB|C|2394
4V6N|1|AB|C|2395
*
4V6N|1|AB|G|2421
4V6N|1|AB|C|2422
4V6N|1|AB|U|2423
4V6N|1|AB|C|2424
4V6N|1|AB|A|2425
4V6N|1|AB|A|2426
4V6N|1|AB|C|2427

Current chains

Chain AB: 23S ribosomal RNA

Nearby chains

Chain A4: 50S ribosomal protein L33
Chain A6: 50S ribosomal protein L35
Chain AN: 50S ribosomal protein L15
Chain AQ: 50S ribosomal protein L18
Chain AY: 50S ribosomal protein L27

J5_4V6N_006