J5_4V6O_008

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

ACGGAAAGACC*GGA(H2U)AACAG*(OMC)CUCG(2MA)(PSU)GU*GUUUAG*CGGUCCCUAU

Length

45 nucleotides

Bulged bases

4V6O|1|BB|C|2055, 4V6O|1|BB|A|2059, 4V6O|1|BB|A|2060, 4V6O|1|BB|A|2062, 4V6O|1|BB|A|2448, 4V6O|1|BB|H2U|2449, 4V6O|1|BB|C|2452, 4V6O|1|BB|U|2500, 4V6O|1|BB|G|2502, 4V6O|1|BB|U|2585, 4V6O|1|BB|U|2609, 4V6O|1|BB|U|2613, 4V6O|1|BB|A|2614

QA status

Modified nucleotides: H2U, OMC, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|A|2054
4V6O|1|BB|C|2055
4V6O|1|BB|G|2056
4V6O|1|BB|G|2057
4V6O|1|BB|A|2058
4V6O|1|BB|A|2059
4V6O|1|BB|A|2060
4V6O|1|BB|G|2061
4V6O|1|BB|A|2062
4V6O|1|BB|C|2063
4V6O|1|BB|C|2064
*
4V6O|1|BB|G|2446
4V6O|1|BB|G|2447
4V6O|1|BB|A|2448
4V6O|1|BB|H2U|2449
4V6O|1|BB|A|2450
4V6O|1|BB|A|2451
4V6O|1|BB|C|2452
4V6O|1|BB|A|2453
4V6O|1|BB|G|2454
*
4V6O|1|BB|OMC|2498
4V6O|1|BB|C|2499
4V6O|1|BB|U|2500
4V6O|1|BB|C|2501
4V6O|1|BB|G|2502
4V6O|1|BB|2MA|2503
4V6O|1|BB|PSU|2504
4V6O|1|BB|G|2505
4V6O|1|BB|U|2506
*
4V6O|1|BB|G|2583
4V6O|1|BB|U|2584
4V6O|1|BB|U|2585
4V6O|1|BB|U|2586
4V6O|1|BB|A|2587
4V6O|1|BB|G|2588
*
4V6O|1|BB|C|2606
4V6O|1|BB|G|2607
4V6O|1|BB|G|2608
4V6O|1|BB|U|2609
4V6O|1|BB|C|2610
4V6O|1|BB|C|2611
4V6O|1|BB|C|2612
4V6O|1|BB|U|2613
4V6O|1|BB|A|2614
4V6O|1|BB|U|2615

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain AD

Transfer RNA; tRNA

Chain B3

50S ribosomal protein L32

Chain BD

50S ribosomal protein L2

Chain BE

50S ribosomal protein L3

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15

Chain BO

50S ribosomal protein L16

Chain BU

50S ribosomal protein L22

Chain BY

50S ribosomal protein L27