J5_4V6O_008
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- ACGGAAAGACC*GGA(H2U)AACAG*(OMC)CUCG(2MA)(PSU)GU*GUUUAG*CGGUCCCUAU
- Length
- 45 nucleotides
- Bulged bases
- 4V6O|1|BB|C|2055, 4V6O|1|BB|A|2059, 4V6O|1|BB|A|2060, 4V6O|1|BB|A|2062, 4V6O|1|BB|A|2448, 4V6O|1|BB|H2U|2449, 4V6O|1|BB|C|2452, 4V6O|1|BB|U|2500, 4V6O|1|BB|G|2502, 4V6O|1|BB|U|2585, 4V6O|1|BB|U|2609, 4V6O|1|BB|U|2613, 4V6O|1|BB|A|2614
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6O|1|BB|A|2054
4V6O|1|BB|C|2055
4V6O|1|BB|G|2056
4V6O|1|BB|G|2057
4V6O|1|BB|A|2058
4V6O|1|BB|A|2059
4V6O|1|BB|A|2060
4V6O|1|BB|G|2061
4V6O|1|BB|A|2062
4V6O|1|BB|C|2063
4V6O|1|BB|C|2064
*
4V6O|1|BB|G|2446
4V6O|1|BB|G|2447
4V6O|1|BB|A|2448
4V6O|1|BB|H2U|2449
4V6O|1|BB|A|2450
4V6O|1|BB|A|2451
4V6O|1|BB|C|2452
4V6O|1|BB|A|2453
4V6O|1|BB|G|2454
*
4V6O|1|BB|OMC|2498
4V6O|1|BB|C|2499
4V6O|1|BB|U|2500
4V6O|1|BB|C|2501
4V6O|1|BB|G|2502
4V6O|1|BB|2MA|2503
4V6O|1|BB|PSU|2504
4V6O|1|BB|G|2505
4V6O|1|BB|U|2506
*
4V6O|1|BB|G|2583
4V6O|1|BB|U|2584
4V6O|1|BB|U|2585
4V6O|1|BB|U|2586
4V6O|1|BB|A|2587
4V6O|1|BB|G|2588
*
4V6O|1|BB|C|2606
4V6O|1|BB|G|2607
4V6O|1|BB|G|2608
4V6O|1|BB|U|2609
4V6O|1|BB|C|2610
4V6O|1|BB|C|2611
4V6O|1|BB|C|2612
4V6O|1|BB|U|2613
4V6O|1|BB|A|2614
4V6O|1|BB|U|2615
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain AB
- Transfer RNA; tRNA
- Chain AD
- Transfer RNA; tRNA
- Chain B3
- 50S ribosomal protein L32
- Chain BD
- 50S ribosomal protein L2
- Chain BE
- 50S ribosomal protein L3
- Chain BF
- 50S ribosomal protein L4
- Chain BN
- 50S ribosomal protein L15
- Chain BO
- 50S ribosomal protein L16
- Chain BU
- 50S ribosomal protein L22
- Chain BY
- 50S ribosomal protein L27
Coloring options: