3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
4V6P|1|AA|G|108, 4V6P|1|AA|A|109, 4V6P|1|AA|G|111, 4V6P|1|AA|C|352, 4V6P|1|AA|A|353
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V6P_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.335
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4V6P|1|AA|C|58
4V6P|1|AA|A|59
4V6P|1|AA|A|60
4V6P|1|AA|G|61
*
4V6P|1|AA|C|106
4V6P|1|AA|G|107
4V6P|1|AA|G|108
4V6P|1|AA|A|109
4V6P|1|AA|C|110
4V6P|1|AA|G|111
4V6P|1|AA|G|112
4V6P|1|AA|G|113
*
4V6P|1|AA|C|314
4V6P|1|AA|A|315
4V6P|1|AA|C|316
*
4V6P|1|AA|G|337
4V6P|1|AA|A|338
4V6P|1|AA|C|339
*
4V6P|1|AA|G|350
4V6P|1|AA|G|351
4V6P|1|AA|C|352
4V6P|1|AA|A|353
4V6P|1|AA|G|354

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AS
30S ribosomal protein S16
Chain AW
30S ribosomal protein S20
Chain BM
50S ribosomal protein L14

Coloring options:


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