J5_4V6P_004
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 4V6P|1|BB|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6P_004 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.2205
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V6P|1|BB|C|47
4V6P|1|BB|G|48
4V6P|1|BB|A|49
4V6P|1|BB|U|50
4V6P|1|BB|G|51
4V6P|1|BB|A|52
4V6P|1|BB|A|53
4V6P|1|BB|G|54
*
4V6P|1|BB|C|116
4V6P|1|BB|G|117
4V6P|1|BB|A|118
4V6P|1|BB|A|119
4V6P|1|BB|U|120
4V6P|1|BB|G|121
*
4V6P|1|BB|C|130
4V6P|1|BB|A|131
*
4V6P|1|BB|U|148
4V6P|1|BB|A|149
4V6P|1|BB|U|150
*
4V6P|1|BB|A|176
4V6P|1|BB|G|177
4V6P|1|BB|G|178
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L34
- Chain BV
- 50S ribosomal protein L23
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