J5_4V6P_006

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CGACUUA*UAGAC*GUUC*GC*GCGAAUG

Length

25 nucleotides

Bulged bases

4V6P|1|BB|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|C|584
4V6P|1|BB|G|585
4V6P|1|BB|A|586
4V6P|1|BB|C|587
4V6P|1|BB|U|588
4V6P|1|BB|U|589
4V6P|1|BB|A|590
*
4V6P|1|BB|U|667
4V6P|1|BB|A|668
4V6P|1|BB|G|669
4V6P|1|BB|A|670
4V6P|1|BB|C|671
*
4V6P|1|BB|G|809
4V6P|1|BB|U|810
4V6P|1|BB|U|811
4V6P|1|BB|C|812
*
4V6P|1|BB|G|1195
4V6P|1|BB|C|1196
*
4V6P|1|BB|G|1250
4V6P|1|BB|C|1251
4V6P|1|BB|G|1252
4V6P|1|BB|A|1253
4V6P|1|BB|A|1254
4V6P|1|BB|U|1255
4V6P|1|BB|G|1256

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15

Chain BS

50S ribosomal protein L20

Chain BT

50S ribosomal protein L21