J5_4V6P_007

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

4V6P|1|BB|C|1675, 4V6P|1|BB|U|1758, 4V6P|1|BB|A|1762, 4V6P|1|BB|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|G|1674
4V6P|1|BB|C|1675
4V6P|1|BB|A|1676
4V6P|1|BB|A|1677
4V6P|1|BB|A|1678
4V6P|1|BB|A|1679
4V6P|1|BB|U|1680
4V6P|1|BB|G|1681
4V6P|1|BB|G|1682
*
4V6P|1|BB|C|1706
4V6P|1|BB|G|1707
*
4V6P|1|BB|U|1751
4V6P|1|BB|C|1752
*
4V6P|1|BB|G|1756
4V6P|1|BB|A|1757
4V6P|1|BB|U|1758
4V6P|1|BB|A|1759
4V6P|1|BB|C|1760
4V6P|1|BB|C|1761
4V6P|1|BB|A|1762
4V6P|1|BB|G|1763
4V6P|1|BB|C|1764
*
4V6P|1|BB|G|1988
4V6P|1|BB|G|1989
4V6P|1|BB|C|1990

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L14

Chain BR

50S ribosomal protein L19