J5_4V6Q_002

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|AA|C|36
4V6Q|1|AA|U|37
4V6Q|1|AA|G|38
4V6Q|1|AA|G|39
*
4V6Q|1|AA|C|403
4V6Q|1|AA|G|404
4V6Q|1|AA|U|405
4V6Q|1|AA|G|406
*
4V6Q|1|AA|C|436
4V6Q|1|AA|U|437
4V6Q|1|AA|U|438
4V6Q|1|AA|U|439
4V6Q|1|AA|C|440
4V6Q|1|AA|A|441
4V6Q|1|AA|G|442
*
4V6Q|1|AA|C|492
4V6Q|1|AA|A|493
4V6Q|1|AA|G|494
4V6Q|1|AA|A|495
4V6Q|1|AA|A|496
4V6Q|1|AA|G|497
4V6Q|1|AA|A|498
4V6Q|1|AA|A|499
4V6Q|1|AA|G|500
*
4V6Q|1|AA|C|545
4V6Q|1|AA|A|546
4V6Q|1|AA|A|547
4V6Q|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4

Chain AO

30S ribosomal protein S12