J5_4V6Q_004

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V6Q|1|BB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6Q_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.2519

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V6Q|1|BB|C|47
4V6Q|1|BB|G|48
4V6Q|1|BB|A|49
4V6Q|1|BB|U|50
4V6Q|1|BB|G|51
4V6Q|1|BB|A|52
4V6Q|1|BB|A|53
4V6Q|1|BB|G|54
*
4V6Q|1|BB|C|116
4V6Q|1|BB|G|117
4V6Q|1|BB|A|118
4V6Q|1|BB|A|119
4V6Q|1|BB|U|120
4V6Q|1|BB|G|121
*
4V6Q|1|BB|C|130
4V6Q|1|BB|A|131
*
4V6Q|1|BB|U|148
4V6Q|1|BB|A|149
4V6Q|1|BB|U|150
*
4V6Q|1|BB|A|176
4V6Q|1|BB|G|177
4V6Q|1|BB|G|178

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L29

Chain B5

50S ribosomal protein L34