J5_4V6R_002

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6R_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.2071

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V6R|1|AA|C|36
4V6R|1|AA|U|37
4V6R|1|AA|G|38
4V6R|1|AA|G|39
*
4V6R|1|AA|C|403
4V6R|1|AA|G|404
4V6R|1|AA|U|405
4V6R|1|AA|G|406
*
4V6R|1|AA|C|436
4V6R|1|AA|U|437
4V6R|1|AA|U|438
4V6R|1|AA|U|439
4V6R|1|AA|C|440
4V6R|1|AA|A|441
4V6R|1|AA|G|442
*
4V6R|1|AA|C|492
4V6R|1|AA|A|493
4V6R|1|AA|G|494
4V6R|1|AA|A|495
4V6R|1|AA|A|496
4V6R|1|AA|G|497
4V6R|1|AA|A|498
4V6R|1|AA|A|499
4V6R|1|AA|G|500
*
4V6R|1|AA|C|545
4V6R|1|AA|A|546
4V6R|1|AA|A|547
4V6R|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4

Chain AO

30S ribosomal protein S12