3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GAAAGACC*GGA(H2U)AACAG*(OMC)CUCG(2MA)(PSU)GU*GUUUAG*CGGUCC
Length
38 nucleotides
Bulged bases
4V6R|1|BB|A|2448, 4V6R|1|BB|H2U|2449, 4V6R|1|BB|A|2451, 4V6R|1|BB|U|2585, 4V6R|1|BB|U|2586, 4V6R|1|BB|A|2587, 4V6R|1|BB|U|2609
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6R|1|BB|G|2057
4V6R|1|BB|A|2058
4V6R|1|BB|A|2059
4V6R|1|BB|A|2060
4V6R|1|BB|G|2061
4V6R|1|BB|A|2062
4V6R|1|BB|C|2063
4V6R|1|BB|C|2064
*
4V6R|1|BB|G|2446
4V6R|1|BB|G|2447
4V6R|1|BB|A|2448
4V6R|1|BB|H2U|2449
4V6R|1|BB|A|2450
4V6R|1|BB|A|2451
4V6R|1|BB|C|2452
4V6R|1|BB|A|2453
4V6R|1|BB|G|2454
*
4V6R|1|BB|OMC|2498
4V6R|1|BB|C|2499
4V6R|1|BB|U|2500
4V6R|1|BB|C|2501
4V6R|1|BB|G|2502
4V6R|1|BB|2MA|2503
4V6R|1|BB|PSU|2504
4V6R|1|BB|G|2505
4V6R|1|BB|U|2506
*
4V6R|1|BB|G|2583
4V6R|1|BB|U|2584
4V6R|1|BB|U|2585
4V6R|1|BB|U|2586
4V6R|1|BB|A|2587
4V6R|1|BB|G|2588
*
4V6R|1|BB|C|2606
4V6R|1|BB|G|2607
4V6R|1|BB|G|2608
4V6R|1|BB|U|2609
4V6R|1|BB|C|2610
4V6R|1|BB|C|2611

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain AB
Transfer RNA; tRNA
Chain B3
50S ribosomal protein L32
Chain BD
50S ribosomal protein L2
Chain BE
50S ribosomal protein L3
Chain BF
50S ribosomal protein L4
Chain BN
50S ribosomal protein L15
Chain BU
50S ribosomal protein L22
Chain BY
50S ribosomal protein L27

Coloring options:

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